Package: flowTraceR 0.1.0

Oliver Kardell

flowTraceR: Tracing Information Flow for Inter-Software Comparisons in Mass Spectrometry-Based Bottom-Up Proteomics

Useful functions to standardize software outputs from ProteomeDiscoverer, Spectronaut, DIA-NN and MaxQuant on precursor, modified peptide and proteingroup level and to trace software differences for identifications such as varying proteingroup denotations for common precursor.

Authors:Oliver Kardell [aut, cre]

flowTraceR_0.1.0.tar.gz
flowTraceR_0.1.0.zip(r-4.5)flowTraceR_0.1.0.zip(r-4.4)flowTraceR_0.1.0.zip(r-4.3)
flowTraceR_0.1.0.tgz(r-4.4-any)flowTraceR_0.1.0.tgz(r-4.3-any)
flowTraceR_0.1.0.tar.gz(r-4.5-noble)flowTraceR_0.1.0.tar.gz(r-4.4-noble)
flowTraceR_0.1.0.tgz(r-4.4-emscripten)flowTraceR_0.1.0.tgz(r-4.3-emscripten)
flowTraceR.pdf |flowTraceR.html✨
flowTraceR/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/okdll/flowtracer/issues

On CRAN:

12 exports 3 stars 1.19 score 37 dependencies 1 dependents 12 scripts 281 downloads

Last updated 2 years agofrom:9eb96116d9. Checks:OK: 7. Indexed: yes.

Exports:analyze_connected_levelsanalyze_unknown_modsconnect_traceR_levelsconvert_all_levelsconvert_modified_peptidesconvert_precursorconvert_proteingroupsget_exampleget_unknown_modstrace_all_levelstrace_leveltrace_unique_common_pg

Dependencies:clicolorspacecomprehenrcpp11dplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigpurrrR6RColorBrewerrlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr